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2005, Skottman, hESC (+)
Genes upregulated in hESC vs NL differentiated cells (T. S4)
List ItemProbeAbbreviationGene Name
231381_at 231381_at HESRG Hypothetical LOC790952
220184_at 220184_at NANOG Nanog homeobox
242260_at 242260_at MATR3 Matrin 3
237911_at 237911_at N.A. Transcribed locus
206286_s_at 206286_s_at TDGF1 Teratocarcinoma-derived growth factor 1
236000_s_at 236000_s_at N.A. Transcribed locus
203453_at 203453_at SCNN1A Sodium channel, nonvoltage-gated 1 alpha
229899_s_at 229899_s_at C20orf199 Chromosome 20 open reading frame 199
228782_at 228782_at SCGB3A2 Secretoglobin, family 3A, member 2
219121_s_at 219121_s_at ESRP1 Epithelial splicing regulatory protein 1
208286_x_at 208286_x_at POU5F1 POU class 5 homeobox 1
229033_s_at 229033_s_at MUM1 Melanoma associated antigen (mutated) 1
231061_at 231061_at N.A. Transcribed locus, moderately similar to XP_001472334.1 PREDICTED: hypothetical protein LOC68280 [Mus musculus]
242352_at 242352_at NIPBL Nipped-B homolog (Drosophila)
204475_at 204475_at MMP1 Matrix metallopeptidase 1 (interstitial collagenase)
244546_at 244546_at CYCS Cytochrome c, somatic
231407_s_at 231407_s_at FOXH1 Forkhead box H1
235955_at 235955_at MARVELD2 MARVEL domain containing 2
243161_x_at 243161_x_at ZFP42 Zinc finger protein 42 homolog (mouse)
205828_at 205828_at MMP3 Matrix metallopeptidase 3 (stromelysin 1, progelatinase)
223689_at 223689_at IGF2BP1 Insulin-like growth factor 2 mRNA binding protein 1
208190_s_at 208190_s_at LSR Lipolysis stimulated lipoprotein receptor
242008_at 242008_at N.A. Transcribed locus
234970_at 234970_at TC2N Tandem C2 domains, nuclear
212873_at 212873_at HMHA1 Histocompatibility (minor) HA-1
218670_at 218670_at PUS1 Pseudouridylate synthase 1
221245_s_at 221245_s_at FZD5 Frizzled homolog 5 (Drosophila)
239975_at 239975_at HLA-DPB2 Major histocompatibility complex, class II, DP beta 2 (pseudogene)
236907_at 236907_at N.A. CDNA FLJ25706 fis, clone TST04817
229292_at 229292_at N.A. Transcribed locus
233297_s_at 233297_s_at C13orf38 Chromosome 13 open reading frame 38
208930_s_at 208930_s_at ILF3 Interleukin enhancer binding factor 3, 90kDa
226675_s_at 226675_s_at MALAT1 Metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)
231297_at 231297_at DOT1L DOT1-like, histone H3 methyltransferase (S. cerevisiae)
231079_at 231079_at N.A. Transcribed locus
227168_at 227168_at LOC150271 hypothetical protein LOC150271
209581_at 209581_at PLA2G16 Phospholipase A2, group XVI
225239_at 225239_at N.A. CDNA FLJ26120 fis, clone SYN00419
213982_s_at 213982_s_at RABGAP1L RAB GTPase activating protein 1-like
203705_s_at 203705_s_at FZD7 Frizzled homolog 7 (Drosophila)
232489_at 232489_at CCDC76 Coiled-coil domain containing 76
242918_at 242918_at NASP Nuclear autoantigenic sperm protein (histone-binding)
218564_at 218564_at RFWD3 Ring finger and WD repeat domain 3
232985_s_at 232985_s_at DPPA4 Developmental pluripotency associated 4
240221_at 240221_at CSNK1A1 Casein kinase 1, alpha 1
230195_at 230195_at LOC100131138 Similar to hCG2040918
206653_at 206653_at POLR3G Polymerase (RNA) III (DNA directed) polypeptide G (32kD)
232392_at 232392_at SFRS3 Splicing factor, arginine/serine-rich 3
201189_s_at 201189_s_at ITPR3 Inositol 1,4,5-triphosphate receptor, type 3
222847_s_at 222847_s_at EGLN3 Egl nine homolog 3 (C. elegans)
232141_at 232141_at U2AF1 U2 small nuclear RNA auxiliary factor 1
220013_at 220013_at EPHX3 Epoxide hydrolase 3
214240_at 214240_at GAL Galanin prepropeptide
239781_at 239781_at hCG_1815504 HCG1815504
223258_s_at 223258_s_at G2E3 G2/M-phase specific E3 ubiquitin ligase
223232_s_at 223232_s_at CGN Cingulin
242565_x_at 242565_x_at C21orf57 Chromosome 21 open reading frame 57
220238_s_at 220238_s_at KLHL7 Kelch-like 7 (Drosophila)
224567_x_at 224567_x_at MALAT1 Metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)
213593_s_at 213593_s_at TRA2A Transformer 2 alpha homolog (Drosophila)
239001_at 239001_at MGST1 Microsomal glutathione S-transferase 1
236894_at 236894_at L1TD1 LINE-1 type transposase domain containing 1
235199_at 235199_at RNF125 Ring finger protein 125
223494_at 223494_at MGEA5 Meningioma expressed antigen 5 (hyaluronidase)
204285_s_at 204285_s_at PMAIP1/NOXA Phorbol-12-myristate-13-acetate-induced protein 1
230543_at 230543_at N.A. Similar to Chloride intracellular channel protein 4 (Intracellular chloride ion channel protein p64H1)
233019_at 233019_at CNOT7 CCR4-NOT transcription complex, subunit 7
220536_at 220536_at C14orf115 Chromosome 14 open reading frame 115
230067_at 230067_at FAM124A Family with sequence similarity 124A
220668_s_at 220668_s_at DNMT3B DNA (cytosine-5-)-methyltransferase 3 beta
230269_at 230269_at N.A. Transcribed locus, strongly similar to NP_001186.1 beaded filament structural protein 1, filensin [Homo sapiens]
242669_at 242669_at UFM1 Ubiquitin-fold modifier 1
230423_at 230423_at LOC388638 hypothetical LOC388638
232774_x_at 232774_x_at ZIK1 Zinc finger protein interacting with K protein 1 homolog (mouse)
232181_at 232181_at LOC153346 Hypothetical protein LOC153346
227846_at 227846_at GPR176 G protein-coupled receptor 176
237810_at 237810_at CLDN6 Claudin 6
213506_at 213506_at F2RL1 Coagulation factor II (thrombin) receptor-like 1
210852_s_at 210852_s_at AASS Aminoadipate-semialdehyde synthase
220714_at 220714_at PRDM14 PR domain containing 14
232111_at 232111_at LOC730125 Hypothetical LOC730125
234723_x_at 234723_x_at N.A. CDNA: FLJ21228 fis, clone COL00739
240155_x_at 240155_x_at ZNF738 Zinc finger protein 738
229434_at 229434_at HNRNPD Heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)
219651_at 219651_at DPPA4 Developmental pluripotency associated 4
208650_s_at 208650_s_at CD24 CD24 molecule
203448_s_at 203448_s_at TERF1 Telomeric repeat binding factor (NIMA-interacting) 1
206309_at 206309_at LECT1 Leukocyte cell derived chemotaxin 1
232180_at 232180_at UGP2 UDP-glucose pyrophosphorylase 2
216493_s_at 216493_s_at IGF2BP3 Insulin-like growth factor 2 mRNA binding protein 3
229010_at 229010_at CBL Cas-Br-M (murine) ecotropic retroviral transforming sequence
243037_at 243037_at N.A.
216202_s_at 216202_s_at SPTLC2 Serine palmitoyltransferase, long chain base subunit 2
221666_s_at 221666_s_at PYCARD PYD and CARD domain containing
230356_at 230356_at N.A. Transcribed locus
203148_s_at 203148_s_at TRIM14 Tripartite motif-containing 14
209258_s_at 209258_s_at SMC3 Structural maintenance of chromosomes 3
238156_at 238156_at N.A. Transcribed locus
224048_at 224048_at USP44 Ubiquitin specific peptidase 44
206541_at 206541_at KLKB1 Kallikrein B, plasma (Fletcher factor) 1
235103_at 235103_at MAN2A1 Mannosidase, alpha, class 2A, member 1
210029_at 210029_at IDO1 Indoleamine 2,3-dioxygenase 1
226663_at 226663_at ANKRD10 Ankyrin repeat domain 10
225846_at 225846_at ESRP1 Epithelial splicing regulatory protein 1
65517_at 65517_at AP1M2 Adaptor-related protein complex 1, mu 2 subunit
221881_s_at 221881_s_at CLIC4 Chloride intracellular channel 4
202712_s_at 202712_s_at CKMT1B Creatine kinase, mitochondrial 1B
224650_at 224650_at MAL2 Mal, T-cell differentiation protein 2
239148_at 239148_at MARVELD3 MARVEL domain containing 3
213359_at 213359_at HNRNPD Heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)
231310_at 231310_at N.A. Transcribed locus
228879_at 228879_at N.A.
209529_at 209529_at PPAP2C Phosphatidic acid phosphatase type 2C
219823_at 219823_at LIN28 Lin-28 homolog (C. elegans)
229974_at 229974_at EVC2 Ellis van Creveld syndrome 2
229518_at 229518_at N.A. Transcribed locus
226926_at 226926_at DMKN Dermokine
212107_s_at 212107_s_at DHX9 DEAH (Asp-Glu-Ala-His) box polypeptide 9
231385_at 231385_at DPPA3 Developmental pluripotency associated 3
220615_s_at 220615_s_at FAR2 Fatty acyl CoA reductase 2
213653_at 213653_at METTL3 Methyltransferase like 3
230563_at 230563_at RASGEF1A RasGEF domain family, member 1A
230597_at 230597_at SLC7A3 Solute carrier family 7 (cationic amino acid transporter, y+ system), member 3
210463_x_at 210463_x_at TRMT1 TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)
200900_s_at 200900_s_at M6PR Mannose-6-phosphate receptor (cation dependent)
223038_s_at 223038_s_at FAM60A Family with sequence similarity 60, member A
228658_at 228658_at LOC150271 hypothetical protein LOC150271
220085_at 220085_at HELLS Helicase, lymphoid-specific
241829_at 241829_at FAM124A Family with sequence similarity 124A
229661_at 229661_at SALL4 Sal-like 4 (Drosophila)
221974_at 221974_at N.A.
230270_at 230270_at PRPF38B PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
211015_s_at 211015_s_at HSPA4 Heat shock 70kDa protein 4
226485_at 226485_at FLJ20674 Hypothetical protein FLJ20674
227152_at 227152_at C12orf35 Chromosome 12 open reading frame 35
222873_s_at 222873_s_at EHMT1 Euchromatic histone-lysine N-methyltransferase 1
206002_at 206002_at GPR64 G protein-coupled receptor 64
203201_at 203201_at PMM2 Phosphomannomutase 2
230896_at 230896_at BEND4 BEN domain containing 4
227322_s_at 227322_s_at DHX32 DEAH (Asp-Glu-Ala-His) box polypeptide 32
227260_at 227260_at ANKRD10 Ankyrin repeat domain 10
223178_s_at 223178_s_at NT5DC1 5'-nucleotidase domain containing 1
223560_s_at 223560_s_at C2orf56 Chromosome 2 open reading frame 56
227830_at 227830_at GABRB3 Gamma-aminobutyric acid (GABA) A receptor, beta 3
202890_at 202890_at MAP7 Microtubule-associated protein 7
209306_s_at 209306_s_at SWAP70 SWAP-70 protein
203341_at 203341_at CEBPZ CCAAT/enhancer binding protein (C/EBP), zeta
234987_at 234987_at N.A. Transcribed locus
223211_at 223211_at HACL1 2-hydroxyacyl-CoA lyase 1
244552_at 244552_at ZNF788 Zinc finger family member 788
201487_at 201487_at CTSC Cathepsin C
224609_at 224609_at SLC44A2 Solute carrier family 44, member 2
213293_s_at 213293_s_at TRIM22 Tripartite motif-containing 22
240681_at 240681_at N.A. Clone HA_003012 unknown mRNA
239202_at 239202_at N.A. CDNA FLJ34848 fis, clone NT2NE2011684, weakly similar to H.sapiens mRNA for plakophilin 2a and b
205527_s_at 205527_s_at GEMIN4 Gem (nuclear organelle) associated protein 4
222765_x_at 222765_x_at ESF1 ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)
211947_s_at 211947_s_at BAT2D1 BAT2 domain containing 1
208941_s_at 208941_s_at SEPHS1 Selenophosphate synthetase 1
202912_at 202912_at ADM Adrenomedullin
227517_s_at 227517_s_at CENPL Centromere protein L
238183_at 238183_at N.A. Transcribed locus
212311_at 212311_at KIAA0746 KIAA0746 protein
212560_at 212560_at SORL1 Sortilin-related receptor, L(DLR class) A repeats-containing
232063_x_at 232063_x_at FARSB Phenylalanyl-tRNA synthetase, beta subunit
211160_x_at 211160_x_at ACTN1 Actinin, alpha 1
202236_s_at 202236_s_at SLC16A1 Solute carrier family 16, member 1 (monocarboxylic acid transporter 1)
228956_at 228956_at UGT8 UDP glycosyltransferase 8
223000_s_at 223000_s_at F11R F11 receptor
225660_at 225660_at SEMA6A Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
211057_at 211057_at ROR1 Receptor tyrosine kinase-like orphan receptor 1
223423_at 223423_at GPR160 G protein-coupled receptor 160
225958_at 225958_at PHC1 Polyhomeotic homolog 1 (Drosophila)
222728_s_at 222728_s_at TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa
228415_at 228415_at N.A. Transcribed locus
226750_at 226750_at N.A. Transcribed locus
202723_s_at 202723_s_at FOXO1 Forkhead box O1
208456_s_at 208456_s_at RRAS2 Related RAS viral (r-ras) oncogene homolog 2
201131_s_at 201131_s_at CDH1 Cadherin 1, type 1, E-cadherin (epithelial)
227133_at 227133_at CXorf39 Chromosome X open reading frame 39
212959_s_at 212959_s_at GNPTAB N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
218257_s_at 218257_s_at UGCGL1 UDP-glucose ceramide glucosyltransferase-like 1
208119_s_at 208119_s_at ZNF93 Zinc finger protein 93
IRB Canceropole AFM CHU INSERM LR MGX UM1 Agglomeration