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2005, Boyer., hESC (+)
Genes co-occupied by Oct4-Sox2-Nanog in hESC (Table S5)
List ItemProbeAbbreviationGene Name
132949 N.A. AASDH Aminoadipate-semialdehyde dehydrogenase
55515 N.A. ACCN4 Amiloride-sensitive cation channel 4, pituitary
170690 N.A. ADAMTS16 ADAM metallopeptidase with thrombospondin type 1 motif, 16
92949 N.A. ADAMTSL1 ADAMTS-like 1
120 N.A. ADD3 Adducin 3 (gamma)
148 N.A. ADRA1A Adrenergic, alpha-1A-, receptor
27063 N.A. ANKRD1 Ankyrin repeat domain 1 (cardiac muscle)
23189 N.A. KANK1 KN motif and ankyrin repeat domains 1
60489 N.A. APOBEC3G Apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G
57492 N.A. ELD_OSA1 BRG1-binding protein ELD_OSA1
414 N.A. ARSD Arylsulfatase D
29028 N.A. PRO2000 PRO2000 protein
463 N.A. ZFHX3 Zinc finger homeobox 3
9550 N.A. ATP6V1G1 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1
8705 N.A. B3GALT4 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4
25805 N.A. NMA putative transmembrane protein
27319 N.A. BHLHE22 Basic helix-loop-helix family, member e22
655 N.A. BMP7 Bone morphogenetic protein 7
701 N.A. BUB1B Budding uninhibited by benzimidazoles 1 homolog beta (yeast)
9184 N.A. BUB3 Budding uninhibited by benzimidazoles 3 homolog (yeast)
0 Unidentified Item
79768 N.A. FLJ22557 hypothetical protein FLJ22557
25957 N.A. DKFZp564B0769 SR rich protein
10842 N.A. C7orf16 Chromosome 7 open reading frame 16
202865 N.A. C7orf33 Chromosome 7 open reading frame 33
81605 N.A. MGC2668 hypothetical protein MGC2668
760 N.A. CA2 Carbonic anhydrase II
762 N.A. CA4 Carbonic anhydrase IV
91768 N.A. CABLES1 Cdk5 and Abl enzyme substrate 1
781 N.A. CACNA2D1 Calcium channel, voltage-dependent, alpha 2/delta subunit 1
830 N.A. CAPZA2 Capping protein (actin filament) muscle Z-line, alpha 2
6347 N.A. CCL2 Chemokine (C-C motif) ligand 2
3732 N.A. CD82 CD82 molecule
83692 N.A. CD99L2 CD99 molecule-like 2
8555 N.A. CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae)
8317 N.A. CDC7 Cell division cycle 7 homolog (S. cerevisiae)
23446 N.A. CDW92 CDW92 antigen
9425 N.A. CDYL Chromodomain protein, Y-like
1134 N.A. CHRNA1 Cholinergic receptor, nicotinic, alpha 1 (muscle)
1303 N.A. COL12A1 Collagen, type XII, alpha 1
23412 N.A. BUP BUP protein
149951 N.A. COMMD7 COMM domain containing 7
1374 N.A. CPT1A Carnitine palmitoyltransferase 1A (liver)
51380 N.A. CSAD Cysteine sulfinic acid decarboxylase
114788 N.A. CSMD3 CUB and Sushi multiple domains 3
1490 N.A. CTGF Connective tissue growth factor
1602 N.A. DACH1 Dachshund homolog 1 (Drosophila)
80243 N.A. PREX2 Phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
79947 N.A. DHDDS Dehydrodolichyl diphosphate synthase
9249 N.A. SDR1 short-chain dehydrogenase_reductase 1
22943 N.A. DKK1 Dickkopf homolog 1 (Xenopus laevis)
1745 N.A. DLX1 Distal-less homeobox 1
1748 N.A. DLX4 Distal-less homeobox 4
1749 N.A. DLX5 Distal-less homeobox 5
1761 N.A. DMRT1 Doublesex and mab-3 related transcription factor 1
55211 N.A. DPPA4 Developmental pluripotency associated 4
1808 N.A. DPYSL2 Dihydropyrimidinase-like 2
1809 N.A. DPYSL3 Dihydropyrimidinase-like 3
11266 N.A. DUSP12 Dual specificity phosphatase 12
1848 N.A. DUSP6 Dual specificity phosphatase 6
51366 N.A. DD5 progestin induced protein
2019 N.A. EN1 Engrailed homeobox 1
5168 N.A. ENPP2 Ectonucleotide pyrophosphatase/phosphodiesterase 2
8320 N.A. EOMES Eomesodermin homolog (Xenopus laevis)
2041 N.A. EPHA1 EPH receptor A1
2043 N.A. EPHA4 EPH receptor A4
80712 N.A. ESX1 ESX homeobox 1
5393 N.A. EXOSC9 Exosome component 9
348235 N.A. FAM33A Family with sequence similarity 33, member A
23291 N.A. FBXW1B F-box and WD-40 domain protein 1B
222894 N.A. FERD3L Fer3-like (Drosophila)
9638 N.A. FEZ1 Fasciculation and elongation protein zeta 1 (zygin I)
2246 N.A. FGF1 Fibroblast growth factor 1 (acidic)
2247 N.A. FGF2 Fibroblast growth factor 2 (basic)
2263 N.A. FGFR2 Fibroblast growth factor receptor 2
2313 N.A. FLI1 Friend leukemia virus integration 1
55702 N.A. CCDC94 Coiled-coil domain containing 94
55019 Unidentified Item
55739 N.A. CARKD Carbohydrate kinase domain containing
55771 N.A. FLJ11029 Hypothetical protein FLJ11029
84931 N.A. LOC84931 Hypothetical LOC84931
55610 N.A. CCDC132 Coiled-coil domain containing 132
200523 N.A. C2orf51 Chromosome 2 open reading frame 51
151278 N.A. CCDC140 Coiled-coil domain containing 140
201973 N.A. FLJ33167 Hypothetical protein FLJ33167
400765 N.A. FLJ35409 FLJ35409 protein
400223 N.A. C14orf181 Chromosome 14 open reading frame 181
387640 N.A. C10orf140 Chromosome 10 open reading frame 140
3170 N.A. FOXA2 Forkhead box A2
27023 N.A. FOXB1 Forkhead box B1
27022 N.A. FOXD3 Forkhead box D3
2308 N.A. FOXO1 Forkhead box O1
23401 N.A. FRAT2 Frequently rearranged in advanced T-cell lymphomas 2
2521 N.A. FUS Fusion (involved in t(12;16) in malignant liposarcoma)
11211 N.A. FZD10 Frizzled homolog 10 (Drosophila)
2572 N.A. GAD2 Glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)
26290 N.A. GALNT8 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8)
2637 N.A. GBX2 Gastrulation brain homeobox 2
2651 N.A. GCNT2 Glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)
2697 N.A. GJA1 Gap junction protein, alpha 1, 43kDa
2737 N.A. GLI3 GLI family zinc finger 3
2790 N.A. GNG10 Guanine nucleotide binding protein (G protein), gamma 10
342096 N.A. GOLGA6 Golgi autoantigen, golgin subfamily a, 6
9402 N.A. GRAP2 GRB2-related adaptor protein 2
145258 N.A. GSC Goosecoid homeobox
84705 N.A. GTPBP3 GTP binding protein 3 (mitochondrial)
55766 N.A. H2AFJ H2A histone family, member J
9421 N.A. HAND1 Heart and neural crest derivatives expressed 1
9464 N.A. HAND2 Heart and neural crest derivatives expressed 2
3037 N.A. HAS2 Hyaluronan synthase 2
55277 N.A. FGGY FGGY carbohydrate kinase domain containing
8820 N.A. HESX1 HESX homeobox 1
3087 N.A. HHEX Hematopoietically expressed homeobox
3009 N.A. HIST1H1B Histone cluster 1, H1b
3007 N.A. HIST1H1D Histone cluster 1, H1d
8336 N.A. HIST1H2AM Histone cluster 1, H2am
8344 N.A. HIST1H2BE Histone cluster 1, H2be
8348 N.A. HIST1H2BO Histone cluster 1, H2bo
8351 N.A. HIST1H3D Histone cluster 1, H3d
8354 N.A. HIST1H3I Histone cluster 1, H3i
8356 N.A. HIST1H3J Histone cluster 1, H3j
8367 N.A. HIST1H4E Histone cluster 1, H4e
8361 N.A. HIST1H4F Histone cluster 1, H4f
8368 N.A. HIST1H4L Histone cluster 1, H4l
8370 N.A. HIST2H4 Histone 2, H4
10363 N.A. HMG20A High-mobility group 20A
51155 N.A. HN1 Hematological and neurological expressed 1
84525 N.A. HOPX HOP homeobox
3211 N.A. HOXB1 Homeobox B1
440101 N.A. FLJ12825 Hypothetical LOC440101
150274 N.A. HSC20 J-type co-chaperone HSC20
23463 N.A. ICMT Isoprenylcysteine carboxyl methyltransferase
389792 N.A. IER5L Immediate early response 5-like
3428 N.A. IFI16 Interferon, gamma-inducible protein 16
64135 N.A. IFIH1 Interferon induced with helicase C domain 1
3561 N.A. IL2RG Interleukin 2 receptor, gamma (severe combined immunodeficiency)
3623 N.A. INHA Inhibin, alpha
3642 N.A. INSM1 Insulinoma-associated 1
3651 N.A. PDX1 Pancreatic and duodenal homeobox 1
153572 N.A. IRX2 Iroquois homeobox 2
3670 N.A. ISL1 ISL LIM homeobox 1
3720 N.A. JMJ jumonji homolog (mouse)
55818 N.A. JMJD1 jumonji domain containing 1
3728 N.A. JUP Junction plakoglobin
3781 N.A. KCNN2 Potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
3791 N.A. KDR Kinase insert domain receptor (a type III receptor tyrosine kinase)
57456 N.A. KIAA1143 KIAA1143
91749 N.A. KIAA1919 KIAA1919
56992 N.A. KIF15 Kinesin family member 15
4254 N.A. KITLG KIT ligand
688 N.A. KLF5 Kruppel-like factor 5 (intestinal)
51088 N.A. KLHL5 Kelch-like 5 (Drosophila)
9215 N.A. LARGE Like-glycosyltransferase
3929 N.A. LBP Lipopolysaccharide binding protein
10660 N.A. LBX1 Ladybird homeobox 1
7044 N.A. EBAF endometrial bleeding associated factor (left-right determination, factor A, transforming growth factor beta superfamily)
9211 N.A. LGI1 Leucine-rich, glioma inactivated 1
64077 N.A. LHPP Phospholysine phosphohistidine inorganic pyrophosphate phosphatase
9355 N.A. LHX2 LIM homeobox 2
64211 N.A. LHX5 LIM homeobox 5
124491 N.A. TMEM170A Transmembrane protein 170A
153364 N.A. MBLAC2 Metallo-beta-lactamase domain containing 2
169355 N.A. IDO2 Indoleamine 2,3-dioxygenase 2
283337 N.A. ZNF740 Zinc finger protein 740
349136 N.A. LOC349136 hypothetical protein LOC349136
440590 N.A. ZYG11A Zyg-11 homolog A (C. elegans)
9227 N.A. LRAT Lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase)
79414 N.A. LRFN3 Leucine rich repeat and fibronectin type III domain containing 3
79442 N.A. LRRC2 Leucine rich repeat containing 2
84894 N.A. FLJ14594 hypothetical protein FLJ14594
23643 N.A. LY96 Lymphocyte antigen 96
4081 N.A. MAB21L1 Mab-21-like 1 (C. elegans)
4123 N.A. MAN2C1 Mannosidase, alpha, class 2C, member 1
9968 N.A. MED12 Mediator complex subunit 12
4211 N.A. MEIS1 Meis homeobox 1
120196 N.A. MGC34830 Hypothetical protein MGC34830
403312 N.A. MGC39545 Hypothetical protein LOC403312
148645 N.A. C1orf211 Chromosome 1 open reading frame 211
10724 N.A. MGEA5 Meningioma expressed antigen 5 (hyaluronidase)
8989 N.A. TRPA1 Transient receptor potential cation channel, subfamily A, member 1
4534 N.A. MTM1 Myotubularin 1
4617 N.A. MYF5 Myogenic factor 5
7994 N.A. MYST3 MYST histone acetyltransferase (monocytic leukemia) 3
10003 N.A. NAALAD2 N-acetylated alpha-linked acidic dipeptidase 2
79923 N.A. NANOG Nanog homeobox
10529 N.A. NEBL Nebulette
4762 N.A. NEUROG1 Neurogenin 1
9603 N.A. NFE2L3 Nuclear factor (erythroid-derived 2)-like 3
4774 N.A. NFIA Nuclear factor I/A
4784 N.A. NFIX Nuclear factor I/X (CCAAT-binding transcription factor)
85027 N.A. MST150 MSTP150
4821 N.A. NKX2-2 NK2 homeobox 2
159296 N.A. NKX2-3 NK2 transcription factor related, locus 3 (Drosophila)
64067 N.A. NPAS3 Neuronal PAS domain protein 3
7101 N.A. NR2E1 Nuclear receptor subfamily 2, group E, member 1
4929 N.A. NR4A2 Nuclear receptor subfamily 4, group A, member 2
65983 N.A. GRAMD3 GRAM domain containing 3
169611 N.A. OLFML2A Olfactomedin-like 2A
56944 N.A. OLFML3 Olfactomedin-like 3
167826 N.A. OLIG3 Oligodendrocyte transcription factor 3
4998 N.A. ORC1L Origin recognition complex, subunit 1-like (yeast)
116039 N.A. OSR2 Odd-skipped related 2 (Drosophila)
23440 N.A. OTP Orthopedia homeobox
5013 N.A. OTX1 Orthodenticle homeobox 1
8505 N.A. PARG Poly (ADP-ribose) glycohydrolase
5080 N.A. PAX6 Paired box 6
648 N.A. BMI1 BMI1 polycomb ring finger oncogene
5128 N.A. PCTK2 PCTAIRE protein kinase 2
5082 N.A. PDCL Phosducin-like
10846 N.A. PDE10A Phosphodiesterase 10A
5218 N.A. PFTK1 PFTAIRE protein kinase 1
79960 N.A. PHF17 PHD finger protein 17
23133 N.A. PHF8 PHD finger protein 8
51268 N.A. PIPOX Pipecolic acid oxidase
10622 N.A. POLR3G Polymerase (RNA) III (DNA directed) polypeptide G (32kD)
5460 N.A. POU5F1 POU class 5 homeobox 1
8611 N.A. PPAP2A Phosphatidic acid phosphatase type 2A
5523 N.A. PPP2R3A Protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha
84366 N.A. PRAC Prostate cancer susceptibility candidate
63978 N.A. PRDM14 PR domain containing 14
112464 N.A. PRKCDBP Protein kinase C, delta binding protein
5629 N.A. PROX1 Prospero homeobox 1
5744 N.A. PTHLH Parathyroid hormone-like hormone
5868 N.A. RAB5A RAB5A, member RAS oncogene family
55696 N.A. RBM22 RNA binding motif protein 22
5978 N.A. REST RE1-silencing transcription factor
11237 N.A. RNF24 Ring finger protein 24
4919 N.A. ROR1 Receptor tyrosine kinase-like orphan receptor 1
6096 N.A. RORB RAR-related orphan receptor B
6222 N.A. RPS18 Ribosomal protein S18
6189 N.A. RPS3A Ribosomal protein S3A
6299 N.A. SALL1 Sal-like 1 (Drosophila)
10371 N.A. SEMA3A Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
6418 N.A. SET SET nuclear oncogene
6422 N.A. SFRP1 Secreted frizzled-related protein 1
6423 N.A. SFRP2 Secreted frizzled-related protein 2
25769 N.A. SLC24A2 Solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
57419 N.A. SLC24A3 Solute carrier family 24 (sodium/potassium/calcium exchanger), member 3
7779 N.A. SLC30A1 Solute carrier family 30 (zinc transporter), member 1
56916 N.A. SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
6657 N.A. SOX2 SRY (sex determining region Y)-box 2
9576 N.A. SPAG6 Sperm associated antigen 6
121599 N.A. SPIC Spi-C transcription factor (Spi-1/PU.1 related)
161742 N.A. SPRED1 Sprouty-related, EVH1 domain containing 1
84620 N.A. ST6GAL2 ST6 beta-galactosamide alpha-2,6-sialyltranferase 2
6774 N.A. STAT3 Signal transducer and activator of transcription 3 (acute-phase response factor)
261729 N.A. STEAP2 Six transmembrane epithelial antigen of the prostate 2
23213 N.A. SULF1 Sulfatase 1
132204 N.A. SYNPR Synaptoporin
6883 N.A. TAF12 TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa
6886 N.A. TAL1 T-cell acute lymphocytic leukemia 1
441951 N.A. C20orf199 Chromosome 20 open reading frame 199
79718 N.A. TBL1XR1 Transducin (beta)-like 1 X-linked receptor 1
6910 N.A. TBX5 T-box 5
6942 N.A. TCF20 Transcription factor 20 (AR1)
83439 N.A. TCF7L1 Transcription factor 7-like 1 (T-cell specific, HMG-box)
6997 N.A. TDGF1 Teratocarcinoma-derived growth factor 1
7022 N.A. TFAP2C Transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)
79977 N.A. FLJ13782 hypothetical protein FLJ13782
7080 N.A. NKX2-1 NK2 homeobox 1
7090 N.A. TLE3 Transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)
259230 N.A. MOB mob protein
3371 N.A. TNC Tenascin C
27327 N.A. TNRC6 trinucleotide repeat containing 6
7153 N.A. TOP2A Topoisomerase (DNA) II alpha 170kDa
10346 N.A. TRIM22 Tripartite motif-containing 22
85363 N.A. TRIM5 Tripartite motif-containing 5
8848 N.A. TSC22D1 TSC22 domain family, member 1
7323 N.A. UBE2D3 Ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)
51569 N.A. BM-002 hypothetical protein BM-002
84101 N.A. USP44 Ubiquitin specific peptidase 44
7874 N.A. USP7 Ubiquitin specific peptidase 7 (herpes virus-associated)
6293 N.A. VPS52 Vacuolar protein sorting 52 homolog (S. cerevisiae)
134430 N.A. TA-WDRP T-cell activation WD repeat protein
151790 N.A. WDR49 WD repeat domain 49
6375 N.A. XCL1 Chemokine (C motif) ligand 1
10138 N.A. YAF2 YY1 associated factor 2
9839 N.A. ZEB2 Zinc finger E-box binding homeobox 2
677 N.A. ZFP36L1 Zinc finger protein 36, C3H type-like 1
7546 N.A. ZIC2 Zic family member 2 (odd-paired homolog, Drosophila)
7547 N.A. ZIC3 Zic family member 3 (odd-paired homolog, Drosophila)
84107 N.A. ZIC4 Zic family member 4
85416 N.A. ZIC5 Zic family member 5 (odd-paired homolog, Drosophila)
55079 N.A. FEZF2 FEZ family zinc finger 2
Hs.274539 Unidentified Item
Hs.149252 Unidentified Item
Hs.205433 Unidentified Item
Hs.58919 Unidentified Item
Hs.264887 Unidentified Item
Hs.170986 Unidentified Item
Hs.182137 Unidentified Item
Hs.213861 Unidentified Item
Hs.163244 Unidentified Item
Hs.199743 Unidentified Item
Hs.107196 Unidentified Item
Hs.46850 Unidentified Item
Hs.30385 Unidentified Item
Hs.20131 Unidentified Item
Hs.213061 Unidentified Item
Hs.269128 Unidentified Item
Hs.123352 Unidentified Item
Hs.30561 Unidentified Item
Hs.162129 Unidentified Item
Hs.120633 Unidentified Item
Hs.137570 Unidentified Item
Hs.137459 Unidentified Item
Hs.22543 Unidentified Item
Hs.463439 Unidentified Item
Hs.371147 Unidentified Item
IRB Canceropole AFM CHU INSERM LR MGX UM1 Agglomeration